OrthoBlock Help
OrthoBlock Data Generation1) Data Sources
2) Methods
OrthoBlock Query Page1) InputOrthoBlock can be queried based on gene or orthologous group.
2) Species Tree (The OrthoDB Hierarchy)The species phylogenetic tree is computed using the multiple alignment of concatenated single-copy orthologs identified by OrthoDB. The nodes numbered are the nodes containing at least 5 species and can be selected as input "Phylogenetic Node". 3) Best Synteny Block Selection CriteriaAmong all the synteny blocks identified for different species sets at certain phylogenetic node, we display only the best synteny block as the result of a query. We provide three different criteria for selecting the best synteny block:
OrthoBlock Result Page1) Query by gene
2) Query by orthologous group
Show Tree & Show HelpUser can view the phylogenetic tree or the help page at any time by just clicking on the buttons in the upper right corner of the pages. Contacts:Please email Jia Li: jia.li [at] unige.ch
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OrthoBlock Help
Thu, 02/09/2012 - 11:44