T-COFFEE, Version_6.92(Fri Sep 12 11:58:00 WEST 2008)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=52
*
 BAD AVG GOOD
*
Tnig_210528   :  52
Trub_210529   :  52
Gacu_210527   :  52
Drer_210436   :  53
Drer_210530   :  52
Drer_210531   :  52
Drer_210438   :  53
Drer_210437   :  53
Xtro_210532   :  52
Ggal_210558   :  52
Acar_210516   :  52
Oana_210556   :  52
Mdom_210562   :  52
Cfam_210557   :  52
Btar_210563   :  52
Mmus_210520   :  52
Rnor_210526   :  52
Mmul_210559   :  52
Ptro_210561   :  52
Hsap_210560   :  52
cons          :  52

Tnig_210528   ----AAAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUGUGU
Trub_210529   ----AAAAGGAUCCCCAUUAAGGUGGGUGGAAUAGUAUAACAAUGUGU
Gacu_210527   ----GAAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUGUGU
Drer_210436   CACCCAAGGGAUCUGCUUUAAGGUGGGUGGAGUAGUAUAACAAUAUGG
Drer_210530   ----CAAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUGUGU
Drer_210531   ----CAAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUGUGU
Drer_210438   CACCCAAGGGAUCUGCUUUAAGGUGGGUGGAGUAGUAUAACAAUAUGG
Drer_210437   CACCCAAGGGAUCUGCUUUAAGGUGGGUGGAGUAGUAUAACAAUAUGG
Xtro_210532   ----AAAACAAUCUCCAUUAAGGUGGGUGGAAUAGUAUAACAAUGUGC
Ggal_210558   -----AAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGC
Acar_210516   ----UAAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGC
Oana_210556   -----AAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGC
Mdom_210562   -----AAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGC
Cfam_210557   -----AAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGC
Btar_210563   -----AAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGC
Mmus_210520   ----UAAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGC
Rnor_210526   ----UAAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUGUGC
Mmul_210559   -----AAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGC
Ptro_210561   -----AAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGC
Hsap_210560   -----AAAGGAUCCUCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGC

cons               **   ***  * ************** ************ ** 


Tnig_210528   CCAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAGCUU---UGC
Trub_210529   CCAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAGCUU---UGC
Gacu_210527   CCAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAGCUU---UGC
Drer_210436   CCCAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAGGCCGGGGGU
Drer_210530   CCAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAGCUG---UGC
Drer_210531   CCAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAGCUG---UGC
Drer_210438   CCCAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAGGCCGGGGGU
Drer_210437   CCCAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAGGCCGGGGGU
Xtro_210532   UCAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAUAUU---UGA
Ggal_210558   UAAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAUCUU---U-A
Acar_210516   UCAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAUCUU---UUU
Oana_210556   UAAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAUCUU---U-A
Mdom_210562   UAAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAUCUU---U-A
Cfam_210557   UAAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAUCUU---U-A
Btar_210563   UAAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUGUCUU---U-A
Mmus_210520   UCAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUGUCUU---UAA
Rnor_210526   UCAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUGUCUU---UAA
Mmul_210559   UAAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAUCUU---U-A
Ptro_210561   UAAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAUCUU---U-A
Hsap_210560   UAAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGUAUCUU---U-A

cons             ********************************