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Rhinovirus genome variation during chronic upper and lower respiratory tract infections.

Tapparel C, Cordey S, Junier T, Farinelli L, Van Belle S, Soccal PM, Aubert JD, Zdobnov EM, Kaiser L.
PLoS One
PMID: 21713005

The Newick Utilities: High-throughput Phylogenetic tree Processing in the UNIX Shell

Junier T, Zdobnov EM
Bioinformatics. 2010 May 13
PMID: 20472542

Rhinovirus Genome Evolution during Experimental Human Infection

Cordey S, Junier T, Gerlach D, Gobbini F, Farinelli L, Zdobnov EM, Winther B, Tapparel C, Kaiser L
PLoS One. 2010 May 11;5(5):e10588
PMID: 20485673

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

The Nasonia Genome Working Group (incl. Junier T, Gerlach D, Waterhouse RM, Kriventseva EV, Wyder S, Zdobnov EM)
Science. 2010 Jan 15;327(5963):343-8.
PMID: 20075255

The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection

Yerly S, Junier T, Gayet-Ageron A, Amari EB, von Wyl V, Günthard HF, Hirschel B, Zdobnov EM, Kaiser L, and the Swiss HIV Cohort Study.
AIDS. 2009 May 29. [Epub ahead of print]
PMID: 19487906

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

The Bovine Genome Sequencing and Analysis Consortium (incl. Gerlach D, Junier T, Kriventseva EV, Zdobnov EM)
Science. 2009 Apr 24;324(5926):522-528
PMID: 19390049

New respiratory enterovirus genotype and rhinovirus strains identified by genotyping circulating picornaviruses

Tapparel C, Junier T, Gerlach D, Van Belle S, Turin L, Cordey S, Muehlemann K, Regamey N, Aubert JD, Soccal PM, Eigenmann P, Zdobnov EM, Kaiser L
Emerg Infect Dis. 2009 May;15(5):719-726
PMID: 19402957

Community analysis of betaproteobacterial ammonia-oxidizing bacteria using the amoCAB operon.

Junier P, Kim OS, Junier T, Ahn TS, Imhoff JS, and Witzel KP
Applied Microbiology and Biotechnology
PMID: 19274459

Composition of diazotrophic bacterial assemblages in bean-planted soil compared to unplanted soil

Junier P, Junier T, Witzel KP, Carú M
European Journal of Soil Biology

TRiFLe, a Program for In Silico Terminal Restriction Fragment Length Polymorphism Analysis with User-Defined Sequence Sets

Junier P, Junier T, Witzel KP
Applied and Environmental Microbiology
PMID: 18757578

The cis-acting replication elements define human enterovirus and rhinovirus species

Cordey S, Gerlach D, Junier T, Zdobnov EM, Kaiser L, Tapparel C.
RNA. 2008 Aug;14(8):1568-78
PMID: 18541697

Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species.

González N, Heeb S, Valverde C, Kay E, Reimmann C, Junier T, Haas D.
BMC Genomics
PMID: 18405392

Comparative in silico analysis of PCR primers suited for diagnostics and cloning of ammonia monooxygenase genes from ammonia-oxi

Junier P, Kim OS, Molina V, Limburg P, Junier T, Imhoff JF, Witzel KP.
FEMS Microbiology Ecology

Biased distributions and decay of long interspersed nuclear elements in the chicken genome.

Abrusán G, Krambeck HJ, Junier T, Giordano J, Warburton PE.
Genetics
PMID: 17947446

New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features

Tapparel C, Junier T, Gerlach D, Cordey S, Van Belle S, Perrin L, Zdobnov EM and Kaiser L
BMC Genomics. 2007 Jul 10; 8(1):224
PMID: 17623054

mmsearch: a motif arrangement language and search program

Junier T, Pagni M, Bucher P.
Bioinformatics. 2001 Dec;17(12):1234-5
PMID: 11751236

trEST, trGEN and Hits: access to databases of predicted protein sequences

Pagni M,Iseli C,Junier T,Falquet L,Jongeneel V,Bucher P
Nucleic Acids Res. 2001 Jan 1;29(1):148-51
PMID: 11125074

Dotlet: diagonal plots in a web browser

Junier T, Pagni M
Bioinformatics. 2000 Feb;16(2):178-9
PMID: 10842741

The eukaryotic promoter database (EPD)

Perier RC, Junier T, Bonnard C, Bucher P
Nucleic Acids Res. 2000 Jan 1;28(1):302-3
PMID: 10592254

The Eukaryotic Promoter Database (EPD): recent developments

Perier RC, Junier T, Bonnard C, Bucher P
Nucleic Acids Res. 1999 Jan 1;27(1):307-9
PMID: 9847211

Evaluation of computer tools for the prediction of transcription factor binding sites on genomic DNA

Roulot E, Fisch I, Junier T, Bucher P, Mermod N
In Silico Biol. 1998;1(1):21-8
PMID: 11471239

SEView: a Java applet for browsing molecular sequence data

Junier T, Bucher P
In Silico Biol. 1998;1(1):13-20
PMID: 11471238

The Eukaryotic Promoter Database EPD

Cavin Perier R, Junier T, Bucher P
Nucleic Acids Res. 1998 Jan 1;26(1):353-7
PMID: 9399872

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Publications by authors:

Zdobnov EM | Wyder S | Waterhouse RM | Kriventseva EV | Junier T | Gerlach D | Rahman N | Vejnar CE | Tegenfeldt FP | Li J | Petty TJ