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Identification of Site-Specific Adaptations Conferring Increased Neural Cell Tropism during Human Enterovirus 71 Infection.

Cordey S, Petty TJ, Schibler M, Martinez Y, Gerlach D, van Belle S, Turin L, Zdobnov EM, Kaiser L, Tapparel C.
PLoS Pathog
PMID: 22910880

The ecoresponsive genome of Daphnia pulex

Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL.
Science
PMID: 21292972

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Kirkness EF, Haas BJ, Sun W, Braig HR, Perotti MA, Clark JM, Lee SH, Robertson HM, Kennedy RC, Elhaik E, Gerlach D, Kriventseva EV, Elsik CG, Graur D, Hill CA, Veenstra JA, Walenz B, Tubío JM, Ribeiro JM, Rozas J, Johnston JS, Reese JT, Popadic A, Tojo M, Raoult D, Reed DL, Tomoyasu Y, Krause E, Mittapalli O, Margam VM, Li HM, Meyer JM, Johnson RM, Romero-Severson J, Vanzee JP, Alvarez-Ponce D, Vieira FG, Aguadé M, Guirao-Rico S, Anzola JM, Yoon KS, Strycharz JP, Unger MF, Christley S, Lobo NF, Seufferheld MJ, Wang N, Dasch GA, Struchiner CJ, Madey G, Hannick LI, Bidwell S, Joardar V, Caler E, Shao R, Barker SC, Cameron S, Bruggner RV, Regier A, Johnson J, Viswanathan L, Utterback TR, Sutton GG, Lawson D, Waterhouse RM, Venter JC, Strausberg RL, Berenbaum MR, Collins FH, Zdobnov EM, Pittendrigh BR
Proc Natl Acad Sci U S A. 2010 Jun 21. [Epub ahead of print]
PMID: 20566863

Rhinovirus Genome Evolution during Experimental Human Infection

Cordey S, Junier T, Gerlach D, Gobbini F, Farinelli L, Zdobnov EM, Winther B, Tapparel C, Kaiser L
PLoS One. 2010 May 11;5(5):e10588
PMID: 20485673

Functional and evolutionary insights from the genomes of three parasitoid Nasonia species

The Nasonia Genome Working Group (incl. Junier T, Gerlach D, Waterhouse RM, Kriventseva EV, Wyder S, Zdobnov EM)
Science. 2010 Jan 15;327(5963):343-8.
PMID: 20075255

Integration of microRNA miR-122 in hepatic circadian gene expression

Gatfield D, Le Martelot G, Vejnar CE, Gerlach D, Schaad O, Fleury-Olela F, Ruskeepää AL, Oresic M, Esau CC, Zdobnov EM, Schibler U
Genes Dev. 2009 June 1;23(11):1313-1326
PMID: 19487572

The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution

The Bovine Genome Sequencing and Analysis Consortium (incl. Gerlach D, Junier T, Kriventseva EV, Zdobnov EM)
Science. 2009 Apr 24;324(5926):522-528
PMID: 19390049

New respiratory enterovirus genotype and rhinovirus strains identified by genotyping circulating picornaviruses

Tapparel C, Junier T, Gerlach D, Van Belle S, Turin L, Cordey S, Muehlemann K, Regamey N, Aubert JD, Soccal PM, Eigenmann P, Zdobnov EM, Kaiser L
Emerg Infect Dis. 2009 May;15(5):719-726
PMID: 19402957

miROrtho: computational survey of microRNA genes

Gerlach D, Kriventseva EV, Rahman N, Vejnar CE, Zdobnov EM
Nucleic Acids Res. 2009 Jan;37(Database issue):D111-D117. Epub 2008 Oct 15
PMID: 18927110

The cis-acting replication elements define human enterovirus and rhinovirus species

Cordey S, Gerlach D, Junier T, Zdobnov EM, Kaiser L, Tapparel C.
RNA. 2008 Aug;14(8):1568-78
PMID: 18541697

New complete genome sequences of human rhinoviruses shed light on their phylogeny and genomic features

Tapparel C, Junier T, Gerlach D, Cordey S, Van Belle S, Perrin L, Zdobnov EM and Kaiser L
BMC Genomics. 2007 Jul 10; 8(1):224
PMID: 17623054

Deep metazoan phylogeny

Gerlach D, Wolf M, Dandekar T, Müller T, Pokorny A, Rahmann S
In Silico Biology 7, 0015 (2007)
PMID: 17688440

A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota

Schultz J, Maisel S, Gerlach D, Muller T, Wolf M
RNA. 2005 Apr;11(4):361-4
PMID: 15769870

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Zdobnov EM | Wyder S | Waterhouse RM | Kriventseva EV | Junier T | Gerlach D | Rahman N | Vejnar CE | Tegenfeldt FP | Li J | Petty TJ